February 6, 2026

What is gut health?

Explore how your microbiome influences immunity and mood, plus tips from Botaniqal on supporting gut health with GAPS.

What is gut health?

Your gut is home to more microorganisms than there are stars in the Milky Way, with an estimated 30-40 trillion bacteria living inside the digestive tract. Collectively, these microbes weigh up to 2 kilograms and function almost like a hidden organ, influencing digestion, immunity, metabolism, and even brain signalling.

This vast internal ecosystem is known as the gut microbiome, and its balance plays a central role in overall health. When the gut microbiome is diverse and well-regulated, it supports normal bodily processes. When it is disrupted, health impacts may extend far beyond the digestive system.

Gut health refers to how effectively this system functions, including how well food is digested, nutrients are absorbed, and immune and inflammatory responses are regulated.

Understanding gut health has become an important focus in modern medicine, with growing evidence linking the gut to immune health, mental wellbeing, metabolic function, and chronic disease risk. For many people, improving gut health can be an important step toward better overall health.

Understanding the gut microbiome

The gut microbiome is made up of beneficial and pathological types of bacteria, viruses, fungi, and other microorganisms. The beneficial species help break down food, produce essential nutrients, regulate inflammation, and protect against harmful pathogens. While the pathological species release toxins and chemicals that can harm your digestive system and have a negative effect on your mental wellbeing, hormone production and digestion.

Each person’s gut microbiome is unique and influenced by factors such as genetics, diet, environment, and lifestyle. 

A healthy gut microbiome is typically diverse, meaning it contains a wide range of beneficial microorganisms working in balance. This microbial diversity is a key marker of good gut health, whereas reduced diversity is associated with a range of health conditions.
 

Why gut health matters

The gut is closely connected to many vital systems in the body:

  • Immune function: Approximately 70% of the immune system is located in the gut, where beneficial bacteria help regulate immune responses. 
  • Brain and mood regulation: The gut and brain communicate through the gut-brain axis, influencing mood, stress responses, and cognitive function. 
  • Metabolic health: Gut bacteria play a role in how the body processes energy, regulates blood sugar, and stores fat. 

When gut health is compromised, these systems may also be affected.

What can affect your gut health?

Several internal and external factors can influence the balance of the gut microbiome.

Diet and nutrition

Diets high in ultra-processed foods may negatively impact gut bacteria diversity. Fermented foods play a pivotal role in increasing the diversity of the microbial community in the gut.

Stress

Chronic stress can alter gut motility, increase gut permeability, and disrupt microbial balance. Studies show that psychological stress can directly influence gut bacteria composition.

Medications

Certain medications, particularly antibiotics, can significantly alter gut bacteria by reducing both harmful and beneficial microbes. Repeated or unnecessary antibiotic use may have longer-term effects on microbiome diversity.

Sleep and lifestyle habits

Poor sleep quality and limited physical activity are associated with changes in gut microbiome composition.

Illness and medical conditions

Gastrointestinal conditions and chronic diseases can affect gut health, sometimes requiring medical assessment and targeted support.

Effects of poor gut health

The effects of poor gut health can vary from mild digestive discomfort to broader systemic symptoms. 

Common signs of poor gut health may include:

  • Bloating, gas, constipation, or diarrhoea
  • Food sensitivities or intolerances
  • Fatigue or low energy levels
  • Frequent infections or reduced immune resilience
  • Skin concerns such as eczema or acne
  • Changes in mood or increased stress sensitivity

Brief tips to support gut health

While gut health can be complex, small, consistent changes may help support a healthier microbiome.

Prioritise fermented and high dense nutrient foods 

Foods such as yoghurt, kefir, kimchi, and sauerkraut contain live microorganisms that may support microbial diversity when consumed as part of a balanced diet. Fermented vegetables and dairy introduce beneficial microbes and help populate the gut. The more diverse the fermented foods, the more diverse the gut microbiome becomes. High dense nutrient food such as organic protein, eggs, and organ meats provide nutrients that nourish the body while reducing stress on the digestive system.

Manage stress

Techniques such as mindfulness, gentle movement, and adequate rest can help regulate the gut-brain axis.

Seek professional guidance

Persistent gut symptoms should be assessed by a qualified healthcare professional. Individualised care is important, as gut health needs vary significantly between individuals.

Supporting your gut health with professional care

If you’re experiencing digestive dysfunction, autoimmune conditions, mental health challenges or chronic illness linked to gut health imbalances, you may benefit from a gut health assessment with our GAPS coach.

GAPS (Gut and Psychology Syndrome) is a nutritional protocol that aims to help heal the gut lining, restore beneficial bacteria and address the root causes of digestive dysfunction, autoimmune conditions, mental health challenges and chronic illness.

📅 Schedule a gut health consultation.

Disclaimer

All information is general and not intended as a substitute for professional advice.  

References

20min  •  New Patients

FREE
Initial consult with our Team at Botaniqal Clinic
BOOK NOW

Select from available time slots that suit your schedule.

Book your FREE consult with our team.

Learn about our services, how it works and get ready for your appointment.

Frequently Asked Questions

Is Botaniqal Clinic a licensed medical provider?

Yes, Botaniqal Clinic is a licensed Australian medical facility specialising in alternative therapeutic treatments. Our clinic employs qualified nurses and doctors registered to prescribe botanical medicine products to treat various conditions.

Why do I need to go through an intake process before my appointment?

Both GP and alternative medicine appointments require an intake process to help us understand your health concerns. This ensures your doctor has all the necessary information to tailor your consultation.

For alternative medicine consultations: The intake process includes a pre-screening form to help our doctors assess if alternative medicine is the best option for your healthcare needs.

For GP consultations: The simplified intake form focuses on your general health and immediate concerns.

How do alternative medicine consultations differ from GP consultations?

Alternative medicine consultations focus on holistic approaches to managing discomfort, sleep issues, or emotional wellbeing and require a more comprehensive prescreening process. If our doctor determines you are not suitable for alternative medicine, we’ll recommend a GP consultation.

GP consultations are for general health concerns, including common illnesses, prescriptions, and general medical advice. These appointments have a straightforward intake process.

Do I need a referral to book a consultation?

No referral is necessary. Simply complete our online pre-screening form to check eligibility, then you can book a consultation directly if suitable for alternative medicine treatment. A referral is ideal but not necessary, however if your health records are incomplete, a Health Summary will be required.

Please note: The alternative natural therapies prescribed by Botaniqal Clinic doctors are not first-line treatments for any medical condition. Conventional treatments must be attempted first to qualify for holistic therapy

Is my information confidential?

Yes, the clinic treats patient privacy seriously. Your information is stored securely and is only shared with pharmacies and suppliers when necessary to provide you with medication, or as required by law.

For prescriptions involving Schedule 8 substances, your healthcare provider will have access to your medical history via real-time monitoring. This is a government program that tracks these medications to prevent misuse.

Can I combine a GP consultation with an alternative medicine consultation?

Currently, appointments are handled separately to ensure the best focus on your health concerns. However, our team can guide you on how to proceed if both services are needed.

Give us a quick call at 1300 153 019 if you are not sure which consultation to choose.

Does health insurance cover alternative medicine treatment?

Most private health insurers in Australia cover some or all of the costs of alternative medicine prescriptions. However, there are exceptions. It's important to check with your insurer specifically to see if they offer coverage before making a claim.

Is my alternative medicine or consultation with Botaniqal Clinic covered by Medicare?

As our clinic continues to evolve and grow, we anticipate that Medicare coverage may become available in the near future. We're actively working towards this goal to make our services more accessible to all patients. We recommend checking back regularly for updates on Medicare coverage, as we're committed to providing you with the most current information about payment options and potential rebates.

Is there a minimum age for a holistic therapy consultation?

Yes, at Botaniqal Clinic we require that you must be 18 years or older to qualify for a holistic therapy consultation.